Open Plant Phenotyping Database
Link to full paper
The Open Plant Phenotyping Database [OPPD] is a public dataset for visual recognition tasks on images of plant seedlings.
The dataset consists of 7,590 RGB images with 315,038 plant objects, representing 64,292 individual plants from 47 different species. Each plant species has been cultivated using three growth conditions (ideal, drought and natural) and tracked temporally to achieve high intra-species variability.
The physical resolution in the images measured at soil level is roughly 44 pixels/mm2
The database currently feature samples from the following species:
| EPPO code | Latin name | English name |
| ALOMY | Alopecurus myosuroides | Blackgrass |
| ANGAR | Anagallis arvensis | Scarlet pimpernel |
| APESV | Apera spica-venti | Loose silky-bent |
| ARTVU | Artemisia vulgaris | Common mugwort |
| AVEFA | Avena fatua | Common wild oat |
| BROST | Bromus sterilis | Barren brome |
| BRSNN | Brassica napus | Rapeseed |
| CAPBP | Capsella bursa-pastoris | Shepherd’s purse |
| CENCY | Cyanus segetum | Cornflower |
| CHEAL | Chenopodium album | Fat-hen |
| CHYSE | Glebionis segetum | Corn marigold |
| CIRAR | Cirsium arvense | Creeping thistle |
| CONAR | Convolvulus arvensis | Field bindweed |
| EPHHE | Euphorbia helioscopia | Umbrella milkweed |
| EPHPE | Euphorbia peplus | Stinging milkweed |
| EROCI | Erodium cicutarium | Common stork’s-bill |
| FUMOF | Fumaria officinalis | Common fumitory |
| GALAP | Galium aparine | Cleavers |
| GERMO | Geranium molle | Dove’s-foot crane’s-bill |
| LAPCO | Lapsana communis | Nipplewort |
| LOLMU | Lolium multiflorum | Italian ryegrass |
| LYCAR | Anchusa arvensis | Common bugloss |
| MATCH | Matricaria chamomilla | Scented mayweed |
| MATIN | Tripleurospermum inodorum | Scentless mayweed |
| MELNO | Silene noctiflora | Night-flowering catchfly |
| MYOAR | Myosotis arvensis | Field forget-me-not |
| PAPRH | Papaver rhoeas | Common poppy |
| PLALA | Plantago lanceolata | Narrowleaf plantain |
| PLAMA | Plantago major | Broadleaf plantain |
| POAAN | Poa annua | Annual bluegrass |
| POLAV | Polygonum aviculare | Prostrate knotweed |
| POLCO | Fallopia convolvulus | Black bindweed |
| POLLA | Persicaria lapathifolia | Pale smartweed |
| POLPE | Persicaria maculosa | Redshank |
| RUMCR | Rumex crispus | Curly dock |
| SENVU | Senecio vulgaris | Common groundsel |
| SINAR | arvensis | Charlock Sinapis |
| SOLNI | Solanum nigrum | Black nightshade |
| SONAS | Sonchus asper | Spiny sowthistle |
| SONOL | Sonchus oleraceus | Common sowthistle |
| STEME | Stellaria media | Common chickweed |
| THLAR | Thlaspi arvense | Field penny-cress |
| URTUR | Urtica urens | Small nettle |
| VERAR | Veronica arvensis | Corn speedwell |
| VERPE | Veronica persica | Common field speedwell |
| VICHI | Vicia hirsuta | Common hairy tare |
| VIOAR | Viola arvensis | Field pansy |
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License
This work is licensed under a Creative Commons Attribution-NonCommercial-ShareAlike 4.0 International – Licens.
Citation
If you use this dataset in your research or elsewhere, please cite/reference the following paper:
PAPER: Open Plant Phenotype Database of Common Weeds in Denmark
Bibtex:
@article{Madsen2020OPPD,
author = {Madsen, Simon Leminen and Mathiassen, Solvejg Kopp and Dyrmann, Mads and Laursen, Morten Stigaard and Paz, Laura-Carlota and J{\o}rgensen, Rasmus Nyholm},
doi = {10.3390/RS12081246},
journal = {Remote Sensing},
keywords = {dataset,plant phenotyping,plant seedlings,weed control},
month = {apr},
number = {8},
pages = {1246},
publisher = {Multidisciplinary Digital Publishing Institute},
title = {{Open Plant Phenotype Database of Common Weeds in Denmark}},
url = {https://www.mdpi.com/691100},
volume = {12},
year = {2020}
}
Responsible for the page’s content: Mads Dyrmann